Assembly Management Rework - Stage 5 & 6 Complete (Stage 4 Pending)

Docs/assemblies.md

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+# Assemblies Runtime Reference
+
+## Database Layout
+- Three SQLite databases live under `Data/Engine/Assemblies` (`official.db`, `community.db`, `user_created.db`) and mirror to `Engine/Assemblies` at runtime.
+- Payload binaries/json store under `Payloads/<payload-guid>` in both staging and runtime directories; the AssemblyCache references payload GUIDs instead of embedding large blobs.
+- WAL mode with shared-cache is enabled on every connection; queue flushes copy the refreshed `.db`, `-wal`, and `-shm` files into the runtime mirror.
+- `AssemblyCache.describe()` reveals dirty/clean state per assembly, helping operators spot pending writes before shutdown or sync operations.
+
+## Dev Mode Controls
+- User-created domain mutations remain open to authenticated operators; community/official writes require an administrator with Dev Mode enabled.
+- Toggle Dev Mode via `POST /api/assemblies/dev-mode/switch` or the Assemblies admin controls; state expires automatically based on the server-side TTL.
+- Privileged actions (create/update/delete, cross-domain clone, queue flush, official sync, import into protected domains) emit audit entries under `Engine/Logs/assemblies.log`.
+- When Dev Mode is disabled, API responses return `dev_mode_required` to prompt admins to enable overrides before retrying protected mutations.
+
+## Backup Guidance
+- Regularly snapshot `Data/Engine/Assemblies` and `Data/Engine/Assemblies/Payloads` alongside the mirrored runtime copies to preserve both metadata and payload artifacts.
+- Include the queue inspection endpoint (`GET /api/assemblies`) in maintenance scripts to verify no dirty entries remain before capturing backups.
+- The new CLI helper `python Data/Engine/tools/assemblies.py sync-official` refreshes the official domain from staged JSON and reports row counts, useful after restoring from backup or before releases.
+- Future automation will extend to scheduled backups and staged restore helpers; until then, ensure filesystem backups capture both SQLite databases and payload directories atomically.